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生物分子大数据分析与功能研究

发布日期:2019-08-25  点击:[]

方向名称

生物分子大数据分析与功能研究

概述

交叉融合三代基因测序技术、干细胞分析技术、基因编辑技术、高通量蛋白质结构功能分析技术、细胞工厂技术、计算机辅助的药物设计等加速对生命蓝图的绘制,对复杂生命活动规律的系统性认识,并通过跨学科、多层面的合作致力于解决重大生命科学和医学问题,推动精准医学、精准农业、先进制造、新型能源材料的创新发展。

学术带头人

李慧

团队成员

姚建庄,朱孔凯

近五年省部级级以上科研、教学成果奖

1、李慧(第8完成人),玉米重要营养品质优良基因发掘与分子育种应用,2013,高等学校科学研究优秀成果技术发明一等奖,教育部

近五年代表性科研项目(省部级以上科研项目、50万以上横向项目)

1、李慧,国家重点研发计划“七大农作物育种”重点专项子课题,玉米营养和健康功能品质形成与改良的分子基础,201607-202012,90万元;

2、李慧,国家自然科学基金面上项目,利用动态关联分析解析玉米籽粒油脂代谢的遗传和分子机制,201801-202112,75万元;

3、李慧,山东省自然科学省属高校优秀青年联合基金项目,基于脂质组和系统生物学策略解析玉米复杂数量性状的遗传基础,201901-202101,30万元;

4、李慧,国家自然科学基金青年项目,玉米籽粒基因表达异方差性的遗传机理研究,201501-201712,26万元;

5、李慧,山东省优秀中青年科学家科研奖励基金项目,玉米籽粒基因对共表达模式变化的遗传机理研究,201412-201612,8万元;

6、李慧,山东省高等学校科技计划项目项目,玉米产量性状表型变异方差的遗传机理及分子育种,201609-201808,5.5万元;

7、姚建庄,国家自然科学青年科学基金项目,新一代SCC-DFTB算法的开发及其在酶设计中的应用,201801-202012,24万元;

8、姚建庄,山东省自然科学基金博士基金项目,计算机辅助减肥药的设计,201708-201912,8万元;

9、朱孔凯,国家自然科学青年科学基金项目,新型选择性蛋白精氨酸甲基转移酶5(PRMT5)双位点抑制剂的发现与抗肿瘤活性研究,201901-202112,21万元;

10、朱孔凯,山东省自然科学基金博士基金项目,新型抗肿瘤靶标精氨酸甲基转移酶PRMT5抑制剂的发现与设计研究,201708-201912,9万元;

11、朱孔凯,山东省重点研发计划(公益类专项)项目,靶向精氨酸甲基转移酶PRMT5的抗肿瘤先导化合物的精准设计与临床前研究,201901-202012,15万元;

近五年代表性学术论文、专著

1. Hui Li, Thrash Adam, Tang Juliet D., He Linlin, Yan Jianbing, Warburton Marilyn L., The Plant Journal, 98(5): 853-863, 2019

2. Xia Xinyao, Zhang Piaopiao, He Linlin, Gao Xingxing, Li Weijun, Zhou Yuanyuan, Li Zongxin*,Li Hui*,Yan Long*, Effects of tillage managements and maize straw returning on soil microbiome using 16S rDNA sequencing, Journal of Integrative Plant Biology, 61(6): 765-777, 2019

3. Pei Laming, Che Ronghui, He Linlin, Gao Xingxing, Li Weijun,Li Hui*, Role of Exogenous Glutathione in Alleviating Abiotic Stress in Maize (Zea mays L.), Journal of Plant Growth Regulation, 38(1): 199-215, 2019

4. Xu Xiuqin, Wang Min, Li Lianbo, Che Ronghui, Li Peng, Pei Laming,Li Hui*, Genome-wide trait-trait dynamics correlation study dissects the gene regulation pattern in maize kernels, BMC Plant Biology, 17: 163, 2017

5. Xu Jing, Li Zhigang, Yang Hongrui, Yang Xiaohong, Chen Cuixia*,Li Hui*, Genetic diversity and molecular evolution of a violaxanthin de-epoxidase gene in maize, Frontiers in Genetics, 7: 131, 2016

6.Li Hui, Peng Zhiyu, Yang Xiaohong, Wang Weidong, Fu Junjie et al.Wang Jianhua,Han Yingjia,Chai Yuchao,Guo Tingting,Yang Ning,Liu Jie,Warburton Marilyn L., Cheng Yanbing, Hao Xiaomin,Zhang Pan,Zhao Jinyang,Liu Yunjun, Wang Guoying*,Li Jiansheng*, Yan Jianbing*, Genome-wide association study dissects the genetic architecture of oil biosynthesis in maize kernels, Nature Genetics, 45(1): 43-50, 2013

7. Wang Xia, Bakanina Kissanga Grace Mercure, Li E., Li Qiang,Yao Jianzhuang*, The catalytic mechanism of S-acyltransferases: acylation is triggered on by a loose transition state and deacylation is turned off by a tight transition state, Physical Chemistry Chemical Physics, 21(23): 12163-12172, 2019

8. Wang Xia, Li Ruirui, Cui Wenchao, Li Qiang, Yao Jianzhuang*, QM/MM free energy Simulations of an efficient Gluten Hydrolase (Kuma030) Implicate for a Reactant-State Based Protein-Design Strategy for General Acid/Base Catalysis, Scientific Reports, 8(1): 7042, 2018

9. Wang Xia, Li Yajing, Chen Xiabin, Zhou Ziyuan,Yao Jianzhuang*, Human Acetyl-CoA Carboxylase 1 Is an Isomerase: Carboxyl Transfer Is Activated by Catalytic Effect of Isomerization, The Journal of Physical Chemistry B, 123(31): 6757-6764, 2019

10. Wang Xia,Yao Jianzhuang*, Improvement of the self-consistent-charge density-functional-tight-binding theory by a modified Mulliken charge, Theoretical Chemistry Accounts, 136(10): 124, 2017

11.Yao Jianzhuang, Chen Feng, Guo Hong, QM/MM free energy simulations of the reaction catalysed by (4S)-limonene synthase involving linalyl diphosphate (LPP) substrate, Molecular Simulation, 44(13-14): 1158-1167,2018

12.Yao Jianzhuang,Chen Xiabin, Zheng Fang, Zhan Chang-Guo, Catalytic Reaction Mechanism for Drug Metabolism in Human Carboxylesterase-1: Cocaine Hydrolysis Pathway, Molecular Pharmaceutics, 15(9): 3871-3880, 2018

13.Yao Jianzhuang, Guo Haobo, Chaiprasongsuk Minta, Zhao Nan, Chen Feng, Yang Xiaohan, Guo Hong, Substrate-Assisted Catalysis in the Reaction Catalyzed by Salicylic Acid Binding Protein 2 (SABP2), a Potential Mechanism of Substrate Discrimination for Some Promiscuous Enzymes, Biochemistry, 54(34): 5366-5375, 2015

14. Yao Jianzhuang, Guo Hong, Yang Xiaohan, PPCM: Combing Multiple Classifiers to Improve Protein-Protein Interaction Prediction, International Journal of Genomics, 2015:7, 2015

15.Yao Jianzhuang, Luo Haixia, Wang Xia, Understanding the Catalytic Mechanism and the Substrate Specificity of an Engineered Gluten Hydrolase by QM/MM Molecular Dynamics and Free Energy Simulations, Journal of Chemical Information and Modeling, 57(5): 1179-1186, 2017

16.Yao Jianzhuang, Wang Xia, Luo Haixia, Gu Pengfei, Understanding the Catalytic Mechanism and the Nature of the Transition State of an Attractive Drug-Target Enzyme (Shikimate Kinase) by Quantum Mechanical/Molecular Mechanical (QM/MM) Studies, Chemistry–A European Journal, 23(64): 16380–16387, 2017

17.Yao Jianzhuang, Yuan Yaxia, Zheng Fang, Zhan Chang-Guo, Unexpected Reaction Pathway for butyrylcholinesterase-catalyzed inactivation of “hunger hormone” ghrelin, Scientific Reports, 6: 22322, 2016

18.Zhu Kongkai*, Shao Jingwei, Tao Hongrui, Yan Xue, Luo Cheng, Zhang Hua*, Duan, Wenhu*, Rational Design, synthesis and biological evaluation of novel triazole derivatives as potent and selective PRMT5 inhibitors with antitumor activity, Journal of Computer-aided Molecular Design, doi: 10.1007/s10822-019-00214-y. [Epub ahead of print], 2019

19.Zhu Kongkai, Tao Hongrui, Song Jiali, Jin Lu, Zhang Yuanyuan, Liu Jingqiu, Chen Zhifeng, Jiang Chengshi*, Luo Cheng*, Zhang Hua*, Identification of 5-benzylidene-2-phenylthiazolones as potent PRMT5 inhibitors by virtual screening, structural optimization and biological evaluations, Bioorganic Chemistry, 81: 289-298, 2018

20.Zhu Kongkai, Jiang Chengshi, Tao Hongrui, Liu Jingqiu, Zhang Hua*, Luo Cheng*, Identification of a novel selective small-molecule inhibitor of protein arginine methyltransferase 5 (PRMT5) by virtual screening, resynthesis and biological evaluations, Bioorganic & Medicinal Chemistry Letters, 28(9): 1476-1483, 2018

21.Zhu Kongkai, Song Jiali, Tao Hongrui, Cheng Zhiqiang, Jiang Chengshi*, Zhang Hua*, Discovery of new potent protein arginine methyltransferase 5 (PRMT5) inhibitors by assembly of key pharmacophores from known inhibitors, Bioorganic & Medicinal Chemistry Letters, 28(23-24): 3693-3699, 2018

22.Zhu Kongkai, Jiang Chengshi, Hu Junchi, Liu Xigong, Yan Xue, Tao Hongrui, Luo Cheng*, Zhang Hua*, Interaction assessments of the first S-adenosylmethionine competitive inhibitor and the essential interacting partner methylosome protein 50 with protein arginine methyltransferase 5 by combined computational methods, Biochemical and Biophysical Research Communications, 495(1): 721-727, 2018

23. Wang Chen, Xu Pan, Zhang Luyu, Huang Jing,Zhu Kongkai*, Luo Cheng*, Current Strategies and Applications for Precision Drug Design, Frontiers Pharmacology, 9:787, 2018

24. Yuan Changchun*, Zhong Shangyong, Li Xingyi, Wang Yanhong, Xun Maomao, Bai Yunli,Zhu Kongkai*, Total synthesis, structural revision and biological evaluation of gamma-elemene-type sesquiterpenes, Organic Biomolecular Chemistry, 16 (42): 7843-7850, 2018

25. Tao Hongrui, Yan Xue,Zhu Kongkai*, Zhang Hua*, Discovery of Novel PRMT5 Inhibitors by Virtual Screening and Biological Evaluations, Chem Pharm Bull (Tokyo), 67(4): 382-388, 2019

26. Jiang Chengshi, Ge Yongxi, Cheng Zhiqiang, Song Jiali, Wang Yinyin,Zhu Kongkai*, Zhang Hua*, Discovery of new multifunctional selective acetylcholinesterase inhibitors: structure-based virtual screening and biological evaluation, Journal of Computer-aided Molecular Design, 33(5): 521-530, 2019

27. Jiang Chengshi*, Ge Yongxi, Cheng Zhiqiang, Wang Yinyin, Tao Hongrui,Zhu Kongkai*, Zhang Hua*, Discovery of New Selective Butyrylcholinesterase (BChE) Inhibitors with Anti-Aβ Aggregation Activity: Structure-Based Virtual Screening, Hit Optimization and Biological Evaluation, Molecules, 24(14), 2019

28. Cheng Zhiqiang,Zhu Kongkai (co-first), Zhang Juan, Song Jiali, Muehlmann Luis Alexandre, Jiang Chengshi*, Liu Changliang*, Zhang Hua*, Molecular-docking-guided design and synthesis of new IAA-tacrine hybrids as multifunctional AChE/BChE inhibitors, Bioorganic Chemistry, 83: 277-288, 2018

29. Mao Ruifeng, Shao Jingwei,Zhu Kongkai (co-first), Zhang Yuanyuan, Ding Hong, Zhang Chenhua, Shi Zhe, Jiang Hualiang, Sun Dequn*, Duan Wenhu*, Luo Cheng*, Potent, Selective, and Cell Active Protein Arginine Methyltransferase 5 (PRMT5) Inhibitor Developed by Structure-Based Virtual Screening and Hit Optimization, Journal of Medicinal Chemistry, 60(14): 6289-6304, 2017

30. Shao Jingwei,Zhu Kongkai (co-first),Du Daohai, Zhang Yuanyuan, Tao Hongrui, Chen Zhifeng, Jiang Hualiang, Chen Kaixian, Luo Cheng*, Duan Wenhu*, Discovery of 2-substituted-N-(3-(3,4-dihydroisoquinolin-2(1H)-yl)-2-hydroxypropyl)-1,2,3,4-tetrahydroisoquinoline-6-carboxamide as potent and selective protein arginine methyltransferases 5 inhibitors: Design, synthesis and biological evaluation, European Journal of Medicinal Chemistry, 164: 317-333, 2019

近五年代表性成果转化或应用

1李慧,许秀勤,裴腊明,李鹏,车荣会,高幸幸,何琳琳。(2017)一种基于基因对共表达模式动态关联解析玉米籽粒类胡萝卜素代谢调控机制的方法(中国)。专利受审号:CN201710169156.6

2李慧,许秀勤,车荣会,李鹏,裴腊明,高幸幸,何琳琳。(2017)一种基于基因表达量与性状动态相关性预测玉米未知基因功能的方法(中国)。专利受审号:CN201710169145.8

3李慧,许秀勤,车荣会,裴腊明,李鹏,何琳琳,高幸幸。(2017)一种基于动态关联分析挖掘玉米籽粒油脂代谢机制的方法(中国)。专利受审号:CN201710169264.3

4李慧,高幸幸,车荣会,裴腊明,李为珺,何琳琳。(2019)一种玉米根际分泌物的收集方法[P],中国发明专利,201910222390.X.

5李慧,高幸幸,车荣会,李为珺,何琳琳。(2019)一种与玉米籽粒大小相关的分子标记及其应用[P],中国发明专利,201910226679.9.

6李慧,何琳琳,朱建堂,车荣会,高幸幸,李为珺。(2019)玉米锌指结合蛋白互作因子Actin及其重组表达载体和应用[P],中国发明专利,201910221979.8

7李慧,何琳琳,朱建堂,车荣会,高幸幸,李为珺。(2019)一种调控拟南芥脂肪酸和淀粉含量的玉米基因ZmNAC77及其应用[P],中国发明专利,201910221636.1

8李慧,何琳琳,朱建堂,车荣会,高幸幸,李为珺。(2019)玉米基因ZmNAC77的一个耐盐耐旱新功能及其应用[P],中国发明专利,201910221996.1

9朱孔凯,江成世,张华,张娟,成志强,宋佳丽,葛永喜。(2018)新型多功能乙酰胆碱酯酶抑制剂及其应用(中国)。专利受审号:CN109503563A

10朱孔凯,张华,江成世,陶洪瑞。一种精氨酸甲基转移酶5抑制剂及其应用(中国)。专利受审号:CN109400545A

11朱孔凯,江成世,张华,宋佳丽,陶洪瑞。5-苯亚甲基-2-苯基噻唑酮类化合物及其制备和应用(中国)。专利受审号:CN108689960A

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